Home / Blog / Tax
Tax

PAYE for Small Employers: When You Must Deduct Tax, and When You Must Not

Updated 12 August 2026·5 min read

Two mistakes, opposite directions, equally common.

The first is the employer who has never deducted a cent of tax because "it is only one person", and one day discovers that the salary went past the threshold two years ago. The second is the employer who deducts something off every wage because tax feels like a thing that ought to be deducted, on a salary that owes nothing at all.

The second one is worse than people think. Money you withhold that was never owed is the employee's money, and you are holding it.

What PAYE actually is

Pay As You Earn is not your tax. It is your employee's income tax, which you are required to withhold from their wage and pay over to SARS on their behalf.

That framing decides most of the arguments. It is their money going to their tax account. You are the collection mechanism, not the taxpayer, and you do not get to keep, delay or approximate it.

When tax is actually owed

Whether PAYE comes off depends on what they earn for the year, measured against the SARS tax threshold and the rebates for the current tax year. Below the threshold, no income tax is payable and no PAYE should be deducted.

The figures move every March with the Budget, so a specific rand amount in an article ages badly. Get the current ones from the SARS tax deduction tables, which is the authoritative source and is updated when the tables change.

What matters more than the figure is the shape of it:

That last point is the practical trap. The salary is under the threshold all year, a thirteenth cheque arrives, and the month it lands has tax in it.

Registering as an employer

Once you are liable to deduct, you must be registered with SARS as an employer. Registration is done on eFiling or with an EMP101, and it gives you a PAYE reference number.

Registration is not a light commitment, and this is the part small employers underestimate. Once registered, you owe returns whether or not there is tax to pay:

A nil return is still a return. Registering and then going quiet produces penalties for the silence, not for the tax.

Our guide on registering as an employer walks through the registration itself.

UIF is a separate question, and it is not optional

This is the single most common confusion. UIF is not PAYE and does not follow the same test.

You can owe no PAYE at all and still owe UIF every single month. UIF is one percent from the employee and one percent from you, and it applies regardless of whether their earnings reach the income tax threshold. If they work more than 24 hours a month for you, they are in.

So the common household position is: no PAYE, UIF every month, registered with the UIF but not necessarily as a PAYE employer. That is a normal, correct state of affairs and it confuses people because they expect the two to travel together. See UIF contributions and what you owe for the detail.

SDL is the third one, and most small employers do not pay it. The Skills Development Levy only applies once your annual payroll passes the registration threshold set for it, which is well above what a household or a very small business pays out in a year.

Two ways to calculate the same tax

SARS publishes monthly deduction tables, and there is also the annual-equivalent formula method. They do not always produce an identical figure for the same salary, particularly with irregular earnings, and that difference is real rather than an error by either party.

If your bookkeeper's number and your payroll's number differ by a few rand, this is usually why. It squares up at assessment. It is worth knowing so you do not spend an afternoon hunting a bug that is a methodology difference.

What to do, in order

  1. Work out their annual earnings, including overtime and any bonus.
  2. Check them against the current SARS threshold and rebates.
  3. If no tax is owed, deduct nothing for PAYE, and say so on the payslip.
  4. Register as an employer if tax is owed, and file the EMP201 by the 7th.
  5. Do UIF regardless, monthly, whatever the PAYE answer is.
  6. Show every deduction on the payslip, so they can see what came off and why.

That last one is not a nicety. A deduction the employee cannot see is a deduction they cannot check, and an unexplained gap between the salary you agreed and the money that arrived is where trust goes.

WageDesk calculates PAYE and UIF on each payslip and shows them as separate lines with the figures behind them, so what came off and why is visible to both of you at the time, not reconstructed in February.

This article explains the rules in general terms. It is not tax advice, and the SARS tables change every March — check the current year's figures before relying on any calculation.

Run your staff admin on WhatsApp

WageDesk handles leave, advances, overtime and payslips for South African employers — no app to install. Sign up for your free 30 days.

Start on WhatsApp

Frequently asked questions

Do I have to deduct PAYE from my domestic employee's salary?

Only if their annual earnings exceed the SARS tax threshold for the current tax year. Most staff on a domestic-scale wage fall under it, so no PAYE is deducted. UIF is a separate matter and is owed monthly regardless.

What is the difference between PAYE and UIF?

PAYE is your employee's income tax, withheld only when their earnings exceed the tax threshold. UIF is a one percent employee plus one percent employer contribution owed every month regardless of earnings, for anyone working more than 24 hours a month. You can owe UIF and no PAYE at the same time, which is the normal position for a household.

When is the EMP201 due?

By the 7th of the month following the month being declared. It covers PAYE, UIF and SDL together. Once you are registered as an employer, a nil return is still a return and skipping it attracts penalties even when no tax was payable.

Do I have to pay the Skills Development Levy?

Most small employers do not. SDL only applies once your annual payroll exceeds the threshold set for it, which is well above what a household or a very small business pays out in a year.

Why does my accountant's PAYE figure differ from my payroll's?

SARS publishes monthly deduction tables, and there is also an annual-equivalent formula method. The two can produce slightly different figures for the same salary, especially with irregular earnings such as overtime or a bonus. It squares up at assessment, and it is usually a methodology difference rather than an error.

What happens if a bonus pushes my employee over the threshold?

PAYE is due on that month's earnings. A salary that sits under the threshold all year can still produce a month with tax in it when a thirteenth cheque or a large overtime run lands, because the test looks at total remuneration and not just the basic salary.

WageDesk is a payroll and HR tool, not a legal, tax or HR advisor, and this article is not legal advice. It is general information on South African employment law to help you understand your obligations. Rates and thresholds change, and every situation is different — verify the current figures and get professional advice for your own case. Official starting points: the Department of Employment and Labour, SARS and the CCMA.